DataLad

This page explains how to use DataLad and the ReproNim containers with Neurodesk tools.

Install DataLad, datalad-container, and the ReproNim containers repository

conda install datalad
pip install datalad_container
datalad install https://github.com/ReproNim/containers.git
cd containers

List all default available containers

datalad containers-list

Download and run the latest container version

datalad containers-run -n neurodesk-romeo

Change version of container

You can change which version of a container is used in two ways.

Option 1: change version in .datalad/config

vi .datalad/config
# now change the version of the container you like
# all available containers can be seen via `ls images/neurodesk`
datalad save -m 'downgraded version of romeo to x.x.x'
datalad containers-run -n neurodesk-romeo

Option 2: change version using the freeze_versions script

# all available containers can be seen via `ls images/neurodesk`
scripts/freeze_versions neurodesk-romeo=3.2.4
datalad save -m 'downgraded version of romeo to 3.2.4'
datalad containers-run -n neurodesk-romeo