This page highlights peer-reviewed papers, preprints, and other research outputs that have used or cited Neurodesk in their methods, workflows, or infrastructure.
For instructions on how to cite Neurodesk and specific tools, visit our Citation Guide.
Developing an Interactive Neuroimaging Education Resource with Neurodesk
Dörig, M., Masson-Trottier, M., Dao, T., Mapue, K., Jahn, A., Ribeiro, F. L., Stewart, A., Shaw, T., Toth, M., Pinkert, M., Taylor, P., Renton, A., Handwerker, D. A., Baracchini, G., Rorden, C., Narayanan, A., & Bollmann, S. EdArXiv, 2026.Democratizing open neuroimaging: Neurodesk’s approach to open data accessibility and utilization
Dao, T. T., Masson-Trottier, M., Ribeiro, F. L., Scarsbrook, J., Stewart, A., Ye, X., Hamilton, E., Bollmann, S., & Narayanan, A. Aperture Neuro, 5(SI 2), 2025.Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging
Renton, A. I., Dao, T. T., Johnstone, T., Civier, O., Sullivan, R. P., White, D. J., … Narayanan, A., & Bollmann, S. Nature Methods, 2024.Surgical white matter disruption leads to downstream atrophy in the non-resected human brain
Pruckner, P., Mito, R., Vaughan, D. N., Jackson, G., Fischmeister, F., Nenning, K.-H., Berger, M., Pataraia, E., Baumgartner, C., Dorfer, C., Rossler, K., Czech, T., Kasprian, G., Bonelli, S., & Smith, R. Brain, 2025.Stable Somatotopy in Chronic Low Back Pain: Is Cortical Map Reorganization a Myth?
Dörig, M., Cole, D. M., Guekos, A., Stämpfli, P., Schuetz, P., Schibli, L., Schweinhardt, P., & Meier, M. L. bioRxiv, 2025.Assessing the association between the Mediterranean, Dietary Approaches to Stop Hypertension and Mediterranean-DASH Intervention for Neurodegenerative Delay dietary patterns, structural connectivity and cognitive function
Arnoldy, L., Gauci, S., Young, L. M., Macpherson, H., Civier, O., Scholey, A., Pipingas, A., & White, D. J. British Journal of Nutrition, 133(7), 1–17, 2025.Predicting functional topography of the human visual cortex from cortical anatomy at scale
Ribeiro, F. L., Satzger, R., Hoffstaedter, F., Bürger, C., Herholz, P., Linhardt, D., Benson, N. C., Schwarzkopf, D. S., Puckett, A. M., Bollmann, S., & Hebart, M. N. bioRxiv, 2025.Effects of Aging, Estimated Fitness, and Cerebrovascular Status on White Matter Microstructural Health
Clements, G. M., Camacho, P., Bowie, D. C., Low, K. A., Sutton, B. P., Gratton, G., & Fabiani, M. Human Brain Mapping, 46(5), e70168, 2025.Characterizing positive and negative quantitative susceptibility values in the cortex following mild traumatic brain injury: a depth- and curvature-based study
Essex, C. A., Merenstein, J. L., Overson, D. K., Truong, T. K., Madden, D. J., Bedggood, M. J., Murray, H., Holdsworth, S. J., Stewart, A. W., Morgan, C., Faull, R. L. M., Hume, P., Theadom, A., & Pedersen, M. Cerebral Cortex, 35(3), 2025.Iron deposition and functional connectivity alterations in the right substantia nigra of adult males with autism
Itahashi, T., Tanji, K., Shikauchi, Y., Naoe, T., Okimura, T., Nakamura, M., Ohta, H., & Hashimoto, R. I. Cerebral Cortex, 35(8), 2025.Grey matter volume differences across Parkinson’s disease motor subtypes in the supplementary motor cortex
Martin, A., Nassif, J., Chaluvadi, L., Schammel, C., Newman-Norlund, R., Bollmann, S., & Absher, J. NeuroImage: Clinical, 45, 103724, 2025.BOLD fMRI at 9.4T with 3D stack-of-spirals readouts
Monreal-Madrigal, A., Kurban, D., Tse, D. H. Y., Ivanov, D., Boulant, N., & Poser, B. A. MAGMA, 2025.Segmentation of the human tongue musculature using MRI: Field guide and validation in motor neuron disease
Shaw, T. B., Ribeiro, F. L., Zhu, X., Aiken, P., Bollmann, S., Chang, J., Chidley, K., Dempsey-Jones, H., Eftekhari, Z., Gillespie, J., Henderson, R. D., Kiernan, M. C., Ktena, I., McCombe, P. A., Ngo, S. T., Taubert, S. T., Whelan, B. M., Ye, X., … Barth, M. Computers in Biology and Medicine, 196(Pt B), 110824, 2025.Assessing the influence of dopamine and mindfulness on the formation of routines in visual search
Garner, K. G., Leow, L. A., Uchida, A., Nolan, C., Jensen, O., Garrido, M. I., & Dux, P. E. Psychophysiology, 61(7), e14571, 2024.Combining the benefits of 3D acquisitions and spiral readouts for VASO fMRI at UHF
Monreal-Madrigal, A., Kurban, D., Huber, L., Ivanov, D., Boulant, N., & Poser, B. A. Imaging Neuroscience, 2, 2024.
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